Literature reference bars
Refbaseline-literature-reference-bars
Reference bars are literature ballparks under family-holdout: Traitar (Weimann 2016) for categorical traits, Sauer & Wang (2019) for OGT, Weissman 2021 for growth-rate-adjacent codon signals, dbCAN / CAZy for carbohydrate pathways, and marker-gene analyses for N/S/Fe cycles.
Composite
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task headline
Suite score
1.00
1.0 = SOTA
Wall clock
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Compute
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Agent cost
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Started
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Results by dataset
Raw metric, 95% CI where reported, and the normalized score against the dataset's SOTA (or reference).
| Dataset | Metric | Value | 95% CI | Normalized | Chance | Ref. | SOTA | n · coverage |
|---|---|---|---|---|---|---|---|---|
| oxygen tolerance Growth conditions | Macro F1 | 0.700 | — | 1.00 | 0.250 | 0.700 | — | — · — |
| temperature range Growth conditions | Macro F1 | 0.600 | — | 1.00 | 0.250 | 0.600 | — | — · — |
| optimum temperature c Growth conditions | Spearman ρ | 0.700 | — | 1.00 | 0.000 | 0.700 | — | — · — |
| optimum ph Growth conditions | Spearman ρ | 0.350 | — | 1.00 | 0.000 | 0.350 | — | — · — |
| gram positive Morphology & dispersal | AUROC | 0.950 | — | 1.00 | 0.500 | 0.950 | — | — · — |
| sporulation Morphology & dispersal | AUROC | 0.900 | — | 1.00 | 0.500 | 0.900 | — | — · — |
| motility Morphology & dispersal | AUROC | 0.850 | — | 1.00 | 0.500 | 0.850 | — | — · — |
| cell shape Morphology & dispersal | Macro F1 | 0.550 | — | 1.00 | 0.143 | 0.550 | — | — · — |
| nitrogen fixation Metabolic pathways | AUPRC | 0.900 | — | 1.00 | 0.061 | 0.900 | — | — · — |
| nitrate reduction Metabolic pathways | AUPRC | 0.750 | — | 1.00 | 0.597 | 0.750 | — | — · — |
| denitrification Metabolic pathways | AUPRC | 0.750 | — | 1.00 | 0.034 | 0.750 | — | — · — |
| sulfate reduction Metabolic pathways | AUPRC | 0.800 | — | 1.00 | 0.011 | 0.800 | — | — · — |
| fermentation Metabolic pathways | AUPRC | 0.650 | — | 1.00 | 0.152 | 0.650 | — | — · — |
| cellulose degradation Metabolic pathways | AUPRC | 0.750 | — | 1.00 | 0.065 | 0.750 | — | — · — |
| xylan degradation Metabolic pathways | AUPRC | 0.700 | — | 1.00 | 0.042 | 0.700 | — | — · — |
| chitin degradation Metabolic pathways | AUPRC | 0.700 | — | 1.00 | 0.015 | 0.700 | — | — · — |
| fumarate reduction Metabolic pathways | AUPRC | 0.550 | — | 1.00 | 0.038 | 0.550 | — | — · — |
| iron reduction Metabolic pathways | AUPRC | 0.600 | — | 1.00 | 0.053 | 0.600 | — | — · — |
Growth conditions 1.00Morphology & dispersal 1.00Metabolic pathways 1.00
Integrity
Reference result.
Clean
- passprovenanceReference bars are literature ballparks under family-holdout: Traitar (Weimann 2016) for categorical traits, Sauer & Wang (2019) for OGT, Weissman 2021 for growth-rate-adjacent codon signals, dbCAN / CAZy for carbohydrate pathways, and marker-gene analyses for N/S/Fe cycles.
Run details
- Kind
- baseline
- Suite
- bacdive_multitrait v1
- Started
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- Finished
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- Artifacts
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